LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-572


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Gene
miRNA
Score
DIANA Links
ADNP-AS1
hsa-miR-572
0.967
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000614698
Biotype: antisense
Gene id: ENSG00000259456
Gene Name: ADNP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-95
0.066
10
LOC100506639
hsa-miR-572
0.965
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
153-174
0.043
0
8mer+wobble
357-376
0.022
1
ADNP-AS1
hsa-miR-572
0.946
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000558899
Biotype: antisense
Gene id: ENSG00000259456
Gene Name: ADNP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-142
0.058
10
RP5-914P20.5
hsa-miR-572
0.945
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110007.1
Biotype: antisense
Gene id: NR_110007.1 (gene)
Gene Name: RP5-914P20.5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-139
0.057
10
XLOC_005417
hsa-miR-572
0.909
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011185
Biotype: transcript isomorph
Gene id: XLOC_005417
Gene Name: XLOC_005417
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1938-1952
0.047
9
6mer
1509-1531
0.001
1
PCBP1-AS1
hsa-miR-572
0.901
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452431
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-439
0.047
6
XLOC_011693
hsa-miR-572
0.889
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024250
Biotype: transcript isomorph
Gene id: XLOC_011693
Gene Name: XLOC_011693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-115
0.043
0
6mer
824-842
0.001
Not Conserved
RP5-894D12.5
hsa-miR-572
0.861
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607733
Biotype: lincRNA
Gene id: ENSG00000271820
Gene Name: RP5-894D12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1224-1251
0.004
Not Conserved
7mer
106-127
0.004
Not Conserved
7mer
174-194
0.004
Not Conserved
7mer
242-262
0.003
Not Conserved
7mer
310-330
0.003
Not Conserved
7mer
378-398
0.003
Not Conserved
7mer
446-466
0.003
Not Conserved
7mer
514-534
0.002
Not Conserved
7mer
582-602
0.002
Not Conserved
6mer
1698-1723
0.002
Not Conserved
7mer
990-1010
0.002
Not Conserved
7mer
650-670
0.002
Not Conserved
7mer
718-738
0.002
Not Conserved
7mer
786-806
0.002
Not Conserved
7mer
854-874
0.002
Not Conserved
7mer
922-942
0.001
Not Conserved
chr22-38_28785274-29006793.1
hsa-miR-572
0.857
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17159-17179
0.005
1
7mer
184308-184313
0.004
Not Conserved
7mer
237334-237350
0.003
1
7mer
182016-182037
0.003
1
7mer
217869-217883
0.002
0
6mer
128931-128948
0.002
3
8mer
67857-67877
0.002
1
6mer
12122-12134
0.002
0
6mer
109352-109368
0.001
1
6mer
212397-212423
0.001
0
6mer
228214-228226
0.001
0
7mer
143834-143860
0.001
1
6mer
207301-207313
0.001
1
6mer
217379-217403
0.001
1
7mer
143046-143065
0.001
1
8mer+wobble
44976-44996
0.001
Not Conserved
6mer
133089-133115
0.001
0
6mer
143903-143922
0.001
1
8mer+wobble
27745-27765
0.001
0
8mer+wobble
181170-181190
0.001
Not Conserved
6mer
100111-100133
0.001
2
6mer
132521-132533
0.001
0
6mer
216668-216679
0.001
0
8mer+wobble
223538-223558
0.001
0
6mer
239177-239192
0.001
0
6mer
45147-45173
0.001
0
6mer
184337-184353
0.001
0
RP11-135A24.4
hsa-miR-572
0.853
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412085
Biotype: antisense
Gene id: ENSG00000233825
Gene Name: RP11-135A24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
326-345
0.022
15
6mer
42-60
0.018
13
RP11-288I21.1
hsa-miR-572
0.843
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453804
Biotype: antisense
Gene id: ENSG00000237938
Gene Name: RP11-288I21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
502-521
0.038
10
RP11-211G3.2
hsa-miR-572
0.826
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000450760
Biotype: lincRNA
Gene id: ENSG00000223401
Gene Name: RP11-211G3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
376-402
0.036
3
GS1-72M22.1
hsa-miR-572
0.823
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607058
Biotype: antisense
Gene id: ENSG00000272163
Gene Name: GS1-72M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2447-2469
0.027
11
8mer
1734-1753
0.007
7
6mer
1663-1690
0.001
8
FLJ31104
hsa-miR-572
0.819
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500093
Biotype: antisense
Gene id: ENSG00000227908
Gene Name: FLJ31104
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-118
0.035
4
WWTR1-AS1
hsa-miR-572
0.797
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000495094
Biotype: antisense
Gene id: ENSG00000241313
Gene Name: WWTR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
15-34
0.028
8
7mer
250-263
0.005
7
XLOC_009458
hsa-miR-572
0.791
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019653
Biotype: transcript isomorph
Gene id: XLOC_009458
Gene Name: XLOC_009458
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-391
0.032
1
RP11-574O7.1
hsa-miR-572
0.784
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518927
Biotype: antisense
Gene id: ENSG00000254041
Gene Name: RP11-574O7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
859-874
0.032
10
RP11-260M19.1
hsa-miR-572
0.762
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557687
Biotype: lincRNA
Gene id: ENSG00000258598
Gene Name: RP11-260M19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
475-495
0.027
0
6mer
201-218
0.003
Not Conserved
USP3-AS1
hsa-miR-572
0.759
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561191
Biotype: antisense
Gene id: ENSG00000259248
Gene Name: USP3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-371
0.029
1
RP11-389C8.2
hsa-miR-572
0.754
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000564956
Biotype: sense_overlapping
Gene id: ENSG00000261269
Gene Name: RP11-389C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-572
Sequence: guccgcucggcgguggccca
MirBase ID: MIMAT0003237
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2237-2250
0.029
0
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